Goudet Group Research group supervised by Jérôme Goudet, University of Lausanne

Publications

Welcome to our Publications page. Below, you’ll find a list of our published work. If you’re interested in any of our ongoing or unpublished research, please feel free to reach out via the contact information provided in the Team section.

All

2025

A method for identifying spatially divergent selection in structured populations
A method for identifying spatially divergent selection in structured populations
Isabela do O, Oscar Gaggiotti, Pierre de Villemereuil, Jerome Goudet
Cold Spring Harbor Laboratory  ·  24 Feb 2025  ·  doi:10.1101/2025.02.23.639751

2024

The recombination landscape of the barn owl, from families to populations
The recombination landscape of the barn owl, from families to populations
Alexandros Topaloudis, Tristan Cumer, Eléonore Lavanchy, Anne-Lyse Ducrest, Celine Simon, Ana Paula Machado, Nika Paposhvili, Alexandre Roulin, Jérôme Goudet
GENETICS  ·  15 Nov 2024  ·  doi:10.1093/genetics/iyae190
Estimation of Jacquard s genetic identity coefficients with bi-allelic variants by constrained least-squares
Estimation of Jacquard’s genetic identity coefficients with bi-allelic variants by constrained least-squares
Jan Graffelman, Bruce S. Weir, Jérôme Goudet
Heredity  ·  07 Nov 2024  ·  doi:10.1038/s41437-024-00731-z
Too big to purge: persistence of deleterious Mutations in Island populations of the European Barn Owl Tyto alba
Too big to purge: persistence of deleterious Mutations in Island populations of the European Barn Owl (Tyto alba)
Eléonore Lavanchy, Tristan Cumer, Alexandros Topaloudis, Anne-Lyse Ducrest, Céline Simon, Alexandre Roulin, Jérôme Goudet
Heredity  ·  13 Oct 2024  ·  doi:10.1038/s41437-024-00728-8
Too big to purge: persistence of deleterious mutations in island populations of the European barn owl Tyto alba
Too big to purge: persistence of deleterious mutations in island populations of the European barn owl (Tyto alba)
Jérôme Goudet, Eléonore Lavanchy, Tristan Cumer, Alexandros Topaloudis, Anne-Lyse Ducrest, Céline Simon, Alexandre Roulin
Springer Science and Business Media LLC  ·  20 May 2024  ·  doi:10.21203/rs.3.rs-4324586/v1
Detecting inbreeding depression in structured populations
Detecting inbreeding depression in structured populations
Eléonore Lavanchy, Bruce S. Weir, Jérôme Goudet
Proceedings of the National Academy of Sciences  ·  30 Apr 2024  ·  doi:10.1073/pnas.2315780121
The recombination landscape of the barn owl, from families to populations
The recombination landscape of the barn owl, from families to populations
Alexandros Topaloudis, Eleonore Lavanchy, Tristan Cumer, Anne-Lyse Ducrest, Celine Simon, Ana Paula Machado, Nika Paposhvili, Alexandre Roulin, Jerome Goudet
Cold Spring Harbor Laboratory  ·  16 Apr 2024  ·  doi:10.1101/2024.04.11.589103
Estimation of Jacquard s genetic identity coefficients with bi-allelic variants by constrained least-squares
Estimation of Jacquard’s genetic identity coefficients with bi-allelic variants by constrained least-squares
Jan Graffelman, Bruce S. Weir, Jérôme Goudet
Cold Spring Harbor Laboratory  ·  29 Mar 2024  ·  doi:10.1101/2024.03.25.586682
Characterization of the diversity of barn owl s mitochondrial genome reveals high copy number variations in the control region
Characterization of the diversity of barn owl’s mitochondrial genome reveals high copy number variations in the control region
Marcelo J. Serrano, Jérôme Goudet, Tristan Cumer
PLOS ONE  ·  25 Jan 2024  ·  doi:10.1371/journal.pone.0295595
The genomic architecture of continuous plumage colour variation in the European barn owl i Tyto alba i
The genomic architecture of continuous plumage colour variation in the European barn owl ( Tyto alba )
Tristan Cumer, Ana Paula Machado, Luis M. San-Jose, Anne-Lyse Ducrest, Céline Simon, Alexandre Roulin, Jérôme Goudet
Proceedings of the Royal Society B: Biological Sciences  ·  10 Jan 2024  ·  doi:10.1098/rspb.2023.1995

2023

An allele-sharing, moment-based estimator of global, population-specific and population-pair FST under a general model of population structure
An allele-sharing, moment-based estimator of global, population-specific and population-pair FST under a general model of population structure
Jerome Goudet, Bruce S. Weir
PLOS Genetics  ·  27 Nov 2023  ·  doi:10.1371/journal.pgen.1010871
The evolution of genetic covariance and modularity as a result of multigenerational environmental fluctuation
The evolution of genetic covariance and modularity as a result of multigenerational environmental fluctuation
Isabela do O, Michael C Whitlock
Evolution Letters  ·  17 Oct 2023  ·  doi:10.1093/evlett/qrad048
Detecting inbreeding depression in structured populations
Detecting inbreeding depression in structured populations
Eléonore Lavanchy, Bruce S. Weir, Jérôme Goudet
Cold Spring Harbor Laboratory  ·  14 Aug 2023  ·  doi:10.1101/2023.08.14.552950
An allele-sharing, moment-based estimator of global, population specific and population pairs i F i sub i ST i sub under a general model of population structure
An allele-sharing, moment-based estimator of global, population specific and population pairsFSTunder a general model of population structure
Jérôme Goudet, Bruce S. Weir
Cold Spring Harbor Laboratory  ·  19 Jul 2023  ·  doi:10.1101/2023.07.18.549618
The genomic architecture of a continuous color polymorphism in the European barn owl i Tyto alba i
The genomic architecture of a continuous color polymorphism in the European barn owl (Tyto alba)
Tristan Cumer, Ana Paula Machado, Luis M. San-Jose, Anne-Lyse Ducrest, Céline Simon, Alexandre Roulin, Jérôme Goudet
Cold Spring Harbor Laboratory  ·  04 Apr 2023  ·  doi:10.1101/2023.04.03.535036
Genetically diverse populations hold the keys to climatic adaptation: a lesson from a cosmopolitan raptor
Genetically diverse populations hold the keys to climatic adaptation: a lesson from a cosmopolitan raptor
Hugo Corval, Tristan Cumer, Alexandros Topaloudis, Flavien Collart, Antoine Guisan, Alexandre Roulin, Jérôme Goudet
Cold Spring Harbor Laboratory  ·  17 Mar 2023  ·  doi:10.1101/2023.03.17.533108
Inferring genetic structure when there is little: population genetics versus genomics of the threatened bat Miniopterus schreibersii across Europe
Inferring genetic structure when there is little: population genetics versus genomics of the threatened bat Miniopterus schreibersii across Europe
Christophe Dufresnes, Ludovic Dutoit, Alan Brelsford, Fardo Goldstein-Witsenburg, Laura Clément, …, Igor Pavlinić, Dino Scaravelli, Martin Ševčík, Philippe Christe, Jérôme Goudet
Scientific Reports  ·  27 Jan 2023  ·  doi:10.1038/s41598-023-27988-4

2022

Genomic basis of insularity and ecological divergence in barn owls Tyto alba of the Canary Islands
Genomic basis of insularity and ecological divergence in barn owls (Tyto alba) of the Canary Islands
Tristan Cumer, Ana Paula Machado, Felipe Siverio, Sidi Imad Cherkaoui, Inês Roque, Rui Lourenço, Motti Charter, Alexandre Roulin, Jérôme Goudet
Heredity  ·  29 Sep 2022  ·  doi:10.1038/s41437-022-00562-w
Effect of reduced genomic representation on using runs of homozygosity for inbreeding characterization
Effect of reduced genomic representation on using runs of homozygosity for inbreeding characterization
Eléonore Lavanchy, Jérôme Goudet
Cold Spring Harbor Laboratory  ·  26 Aug 2022  ·  doi:10.1101/2022.08.26.505374
How HLA diversity is apportioned: influence of selection and relevance to transplantation
How HLA diversity is apportioned: influence of selection and relevance to transplantation
André Silva Maróstica, Kelly Nunes, Erick C. Castelli, Nayane S. B. Silva, Bruce S. Weir, Jérôme Goudet, Diogo Meyer
Philosophical Transactions of the Royal Society B: Biological Sciences  ·  18 Apr 2022  ·  doi:10.1098/rstb.2020.0420

2021

Genomic bases of insularity and ecological divergence in barn owls i Tyto alba i of the Canary Islands
Genomic bases of insularity and ecological divergence in barn owls (Tyto alba) of the Canary Islands
Tristan Cumer, Ana Paula Machado, Felipe Siverio, Sidi Imad Cherkaoui, Inês Roque, Rui Lourenço, Motti Charter, Alexandre Roulin, Jérôme Goudet
Cold Spring Harbor Laboratory  ·  24 Dec 2021  ·  doi:10.1101/2021.12.24.473866
Genomic consequences of colonisation, migration and genetic drift in barn owl insular populations of the eastern Mediterranean
Genomic consequences of colonisation, migration and genetic drift in barn owl insular populations of the eastern Mediterranean
Ana Paula Machado, Alexandros Topaloudis, Tristan Cumer, Eléonore Lavanchy, Vasileios Bontzorlos, …, Anne‐Lyse Ducrest, Mélanie Dupasquier, Nicolas Guex, Alexandre Roulin, Jérôme Goudet
Molecular Ecology  ·  23 Dec 2021  ·  doi:10.1111/mec.16324
Landscape and Climatic Variations Shaped Secondary Contacts amid Barn Owls of the Western Palearctic
Landscape and Climatic Variations Shaped Secondary Contacts amid Barn Owls of the Western Palearctic
Tristan Cumer, Ana Paula Machado, Guillaume Dumont, Vasileios Bontzorlos, Renato Ceccherelli, …, Marko Rakovic, Inês Roque, Felipe Siverio, Alexandre Roulin, Jérôme Goudet
Molecular Biology and Evolution  ·  06 Dec 2021  ·  doi:10.1093/molbev/msab343
Rank-invariant estimation of inbreeding coefficients
Rank-invariant estimation of inbreeding coefficients
Qian S. Zhang, Jérôme Goudet, Bruce S. Weir
Heredity  ·  25 Nov 2021  ·  doi:10.1038/s41437-021-00471-4
Unexpected post glacial colonisation route explains the white colour of barn owls i Tyto alba i from the British Isles
Unexpected post‐glacial colonisation route explains the white colour of barn owls (Tyto alba) from the British Isles
Ana Paula Machado, Tristan Cumer, Christian Iseli, Emmanuel Beaudoing, Anne‐Lyse Ducrest, …, Hans‐Dieter Martens, Laure Prévost, David Ramsden, Alexandre Roulin, Jérôme Goudet
Molecular Ecology  ·  06 Nov 2021  ·  doi:10.1111/mec.16250

2020

Common garden experiments to study local adaptation need to account for population structure
Common garden experiments to study local adaptation need to account for population structure
Pierre de Villemereuil, Oscar E. Gaggiotti, Jérôme Goudet
Journal of Ecology  ·  12 Nov 2020  ·  doi:10.1111/1365-2745.13528
Greater topoclimatic control of above versus below ground communities
Greater topoclimatic control of above‐ versus below‐ground communities
Heidi K. Mod, Daniel Scherrer, Valeria Di Cola, Olivier Broennimann, Quentin Blandenier, …, David Singer, Sylvain Ursenbacher, Erika Yashiro, Jan R. van der Meer, Antoine Guisan
Global Change Biology  ·  27 Sep 2020  ·  doi:10.1111/gcb.15330
New genome assembly of the barn owl i Tyto alba alba i
New genome assembly of the barn owl (Tyto alba alba)
Anne‐Lyse Ducrest, Samuel Neuenschwander, Emanuel Schmid‐Siegert, Marco Pagni, Clément Train, …, Mélanie Dupasquier, Christophe Dessimoz, Ioannis Xenarios, Alexandre Roulin, Jérôme Goudet
Ecology and Evolution  ·  19 Feb 2020  ·  doi:10.1002/ece3.5991

2018

How to estimate kinship
How to estimate kinship
Jérôme Goudet, Tomas Kay, Bruce S. Weir
Molecular Ecology  ·  07 Sep 2018  ·  doi:10.1111/mec.14833
QuantiNemo 2: a Swiss knife to simulate complex demographic and genetic scenarios, forward and backward in time
QuantiNemo 2: a Swiss knife to simulate complex demographic and genetic scenarios, forward and backward in time
Samuel Neuenschwander, Frédéric Michaud, Jérôme Goudet
Bioinformatics  ·  23 Aug 2018  ·  doi:10.1093/bioinformatics/bty737
The Effect of Balancing Selection on Population Differentiation: A Study with HLA Genes
The Effect of Balancing Selection on Population Differentiation: A Study with HLA Genes
Débora Y C Brandt, Jônatas César, Jérôme Goudet, Diogo Meyer
G3 Genes|Genomes|Genetics  ·  01 Aug 2018  ·  doi:10.1534/g3.118.200367
Female-biased dispersal and non-random gene flow of MC1R variants do not result in a migration load in barn owls
Female-biased dispersal and non-random gene flow of MC1R variants do not result in a migration load in barn owls
Valérie Ducret, Michael Schaub, Jérôme Goudet, Alexandre Roulin
Heredity  ·  13 Jul 2018  ·  doi:10.1038/s41437-018-0115-9
The Rocky Mountains as a dispersal barrier between barn owl i Tyto alba i populations in North America
The Rocky Mountains as a dispersal barrier between barn owl (Tyto alba) populations in North America
Ana Paula Machado, Laura Clément, Vera Uva, Jérôme Goudet, Alexandre Roulin
Journal of Biogeography  ·  30 Mar 2018  ·  doi:10.1111/jbi.13219
Complex genetic patterns in human arise from a simple range-expansion model over continental landmasses
Complex genetic patterns in human arise from a simple range-expansion model over continental landmasses
Ricardo Kanitz, Elsa G. Guillot, Sylvain Antoniazza, Samuel Neuenschwander, Jérôme Goudet
PLOS ONE  ·  21 Feb 2018  ·  doi:10.1371/journal.pone.0192460
Sex antagonistic genes, scp XY scp recombination and feminized Y chromosomes
Sex‐antagonistic genes, XY recombination and feminized Y chromosomes
E. Cavoto, S. Neuenschwander, J. Goudet, N. Perrin
Journal of Evolutionary Biology  ·  23 Jan 2018  ·  doi:10.1111/jeb.13235

2017

A genetic reconstruction of the invasion of the calanoid copepod Pseudodiaptomus inopinus across the North American Pacific Coast
A genetic reconstruction of the invasion of the calanoid copepod Pseudodiaptomus inopinus across the North American Pacific Coast
Eric Dexter, Stephen M. Bollens, Jeffery Cordell, Ho Young Soh, Gretchen Rollwagen-Bollens, Susanne P. Pfeifer, Jérôme Goudet, Séverine Vuilleumier
Biological Invasions  ·  12 Dec 2017  ·  doi:10.1007/s10530-017-1649-0
A Unified Characterization of Population Structure and Relatedness
A Unified Characterization of Population Structure and Relatedness
Bruce S Weir, Jérôme Goudet
Genetics  ·  01 Aug 2017  ·  doi:10.1534/genetics.116.198424
Broad-Scale Genetic Diversity of Cannabis for Forensic Applications
Broad-Scale Genetic Diversity of Cannabis for Forensic Applications
Christophe Dufresnes, Catherine Jan, Friederike Bienert, Jérôme Goudet, Luca Fumagalli
PLOS ONE  ·  20 Jan 2017  ·  doi:10.1371/journal.pone.0170522
Phosphorus acquisition efficiency in arbuscular mycorrhizal maize is correlated with the abundance of root external hyphae and the accumulation of transcripts encoding PHT1 phosphate transporters
Phosphorus acquisition efficiency in arbuscular mycorrhizal maize is correlated with the abundance of root‐external hyphae and the accumulation of transcripts encoding PHT1 phosphate transporters
Ruairidh J. H. Sawers, Simon F. Svane, Clement Quan, Mette Grønlund, Barbara Wozniak, …, Ricardo A. Chávez Montes, Ivan Baxter, Jerome Goudet, Iver Jakobsen, Uta Paszkowski
New Phytologist  ·  18 Jan 2017  ·  doi:10.1111/nph.14403

2016

Linking genomics and population genetics with R
Linking genomics and population genetics with R
Emmanuel Paradis, Thierry Gosselin, Jérôme Goudet, Thibaut Jombart, Klaus Schliep
Molecular Ecology Resources  ·  29 Aug 2016  ·  doi:10.1111/1755-0998.12577
Sex specific allelic transmission bias suggests sexual conflict at i scp MC scp 1R i
Sex‐specific allelic transmission bias suggests sexual conflict at MC1R
Valérie Ducret, Arnaud Gaigher, Céline Simon, Jérôme Goudet, Alexandre Roulin
Molecular Ecology  ·  26 Aug 2016  ·  doi:10.1111/mec.13781
i apex i : phylogenetics with multiple genes
apex: phylogenetics with multiple genes
Thibaut Jombart, Frederick Archer, Klaus Schliep, Zhian Kamvar, Rebecca Harris, Emmanuel Paradis, Jérome Goudet, Hilmar Lapp
Molecular Ecology Resources  ·  12 Aug 2016  ·  doi:10.1111/1755-0998.12567
Population-specific F values for forensic STR markers: A worldwide survey
Population-specific F values for forensic STR markers: A worldwide survey
John Buckleton, James Curran, Jérôme Goudet, Duncan Taylor, Alexandre Thiery, B.S. Weir
Forensic Science International: Genetics  ·  01 Jul 2016  ·  doi:10.1016/j.fsigen.2016.03.004
Reconstructing the demographic history of divergence between European river and brook lampreys using approximate Bayesian computations
Reconstructing the demographic history of divergence between European river and brook lampreys using approximate Bayesian computations
Quentin Rougemont, Camille Roux, Samuel Neuenschwander, Jerome Goudet, Sophie Launey, Guillaume Evanno
PeerJ  ·  07 Apr 2016  ·  doi:10.7717/peerj.1910
Genomic Evidence for Adaptive Inversion Clines in i Drosophila melanogaster i
Genomic Evidence for Adaptive Inversion Clines inDrosophila melanogaster
Martin Kapun, Daniel K. Fabian, Jérôme Goudet, Thomas Flatt
Molecular Biology and Evolution  ·  21 Jan 2016  ·  doi:10.1093/molbev/msw016

2015

The genetic basis of color-related local adaptation in a ring-like colonization around the Mediterranean
The genetic basis of color-related local adaptation in a ring-like colonization around the Mediterranean
Reto Burri, Sylvain Antoniazza, Arnaud Gaigher, Anne-Lyse Ducrest, Céline Simon, Luca Fumagalli, Jérôme Goudet, Alexandre Roulin
Evolution  ·  15 Dec 2015  ·  doi:10.1111/evo.12824
Mapping Bias Overestimates Reference Allele Frequencies at the i HLA i Genes in the 1000 Genomes Project Phase I Data
Mapping Bias Overestimates Reference Allele Frequencies at the HLA Genes in the 1000 Genomes Project Phase I Data
Débora Y C Brandt, Vitor R C Aguiar, Bárbara D Bitarello, Kelly Nunes, Jérôme Goudet, Diogo Meyer
G3 Genes|Genomes|Genetics  ·  01 May 2015  ·  doi:10.1534/g3.114.015784
How a haemosporidian parasite of bats gets around: the genetic structure of a parasite, vector and host compared
How a haemosporidian parasite of bats gets around: the genetic structure of a parasite, vector and host compared
F. Witsenburg, L. Clément, A. López‐Baucells, J. Palmeirim, I. Pavlinić, …, M. Ševčík, L. Dutoit, N. Salamin, J. Goudet, P. Christe
Molecular Ecology  ·  01 Feb 2015  ·  doi:10.1111/mec.13071

2014

Natural selection in a postglacial range expansion: the case of the colour cline in the European barn owl
Natural selection in a postglacial range expansion: the case of the colour cline in the European barn owl
Sylvain Antoniazza, Ricardo Kanitz, Samuel Neuenschwander, Reto Burri, Arnaud Gaigher, Alexandre Roulin, Jérôme Goudet
Molecular Ecology  ·  30 Oct 2014  ·  doi:10.1111/mec.12957
Wheat alleles introgress into selfing wild relatives: empirical estimates from approximate Bayesian computation in i Aegilops triuncialis i
Wheat alleles introgress into selfing wild relatives: empirical estimates from approximate Bayesian computation in Aegilops triuncialis
Mila Pajkovic, Sylvain Lappe, Rachel Barman, Christian Parisod, Samuel Neuenschwander, Jerome Goudet, Nadir Alvarez, Roberto Guadagnuolo, François Felber, Nils Arrigo
Molecular Ecology  ·  01 Oct 2014  ·  doi:10.1111/mec.12918
Soil fungal communities of grasslands are environmentally structured at a regional scale in the scp A scp lps
Soil fungal communities of grasslands are environmentally structured at a regional scale in the Alps
L. Pellissier, H. Niculita‐Hirzel, A. Dubuis, M. Pagni, N. Guex, …, N. Salamin, I. Xenarios, J. Goudet, I. R. Sanders, A. Guisan
Molecular Ecology  ·  01 Aug 2014  ·  doi:10.1111/mec.12854
On the transition of genetic differentiation from isolation to panmixia: What we can learn from and
On the transition of genetic differentiation from isolation to panmixia: What we can learn from and
Nicolas Alcala, Jérôme Goudet, Séverine Vuilleumier
Theoretical Population Biology  ·  01 May 2014  ·  doi:10.1016/j.tpb.2014.02.003

2013

Density-based hierarchical clustering of pyro-sequences on a large scale the case of fungal ITS1
Density-based hierarchical clustering of pyro-sequences on a large scale—the case of fungal ITS1
Marco Pagni, Hélène Niculita-Hirzel, Loïc Pellissier, Anne Dubuis, Ioannis Xenarios, Antoine Guisan, Ian R. Sanders, Jérôme Goudet, Nicolas Guex
Bioinformatics  ·  28 Mar 2013  ·  doi:10.1093/bioinformatics/btt149
Peak and Persistent Excess of Genetic Diversity Following an Abrupt Migration Increase
Peak and Persistent Excess of Genetic Diversity Following an Abrupt Migration Increase
Nicolas Alcala, Daniela Streit, Jérôme Goudet, Séverine Vuilleumier
Genetics  ·  01 Mar 2013  ·  doi:10.1534/genetics.112.147785
Plant species distributions along environmental gradients: do belowground interactions with fungi matter
Plant species distributions along environmental gradients: do belowground interactions with fungi matter?
Loïc Pellissier, Eric Pinto-Figueroa, Hélène Niculita-Hirzel, Mari Moora, Lucas Villard, …, Nicolas Guex, Marco Pagni, Ioannis Xenarios, Ian Sanders, Antoine Guisan
Frontiers in Plant Science  ·  01 Jan 2013  ·  doi:10.3389/fpls.2013.00500

2012

Plants and tortoises: mutations in the i Arabidopsis i jasmonate pathway increase feeding in a vertebrate herbivore
Plants and tortoises: mutations in the Arabidopsis jasmonate pathway increase feeding in a vertebrate herbivore
ALIA MAFLI, JÉRÔME GOUDET, EDWARD E. FARMER
Molecular Ecology  ·  20 Mar 2012  ·  doi:10.1111/j.1365-294X.2012.05533.x
GENETIC BASIS OF ADAPTATION IN ARABIDOPSIS THALIANA: LOCAL ADAPTATION AT THE SEED DORMANCY QTL DOG1
GENETIC BASIS OF ADAPTATION IN ARABIDOPSIS THALIANA: LOCAL ADAPTATION AT THE SEED DORMANCY QTL DOG1
Ilkka Kronholm, F. Xavier Picó, Carlos Alonso-Blanco, Jérôme Goudet, Juliette de Meaux
Evolution  ·  28 Feb 2012  ·  doi:10.1111/j.1558-5646.2012.01590.x

2011

Local adaptation and matching habitat choice in female barn owls with respect to melanic coloration
Local adaptation and matching habitat choice in female barn owls with respect to melanic coloration
A. N. DREISS, S. ANTONIAZZA, R. BURRI, L. FUMAGALLI, C. SONNAY, C. FREY, J. GOUDET, A. ROULIN
Journal of Evolutionary Biology  ·  09 Nov 2011  ·  doi:10.1111/j.1420-9101.2011.02407.x
Ecology and life history affect different aspects of the population structure of 27 high-alpine plants
Ecology and life history affect different aspects of the population structure of 27 high-alpine plants
PATRICK G. MEIRMANS, JEROME GOUDET, OSCAR E. GAGGIOTTI
Molecular Ecology  ·  20 Jun 2011  ·  doi:10.1111/j.1365-294X.2011.05164.x
Global Invasion History of the Fire Ant i Solenopsis invicta i
Global Invasion History of the Fire Ant Solenopsis invicta
Marina S. Ascunce, Chin-Cheng Yang, Jane Oakey, Luis Calcaterra, Wen-Jer Wu, Cheng-Jen Shih, Jérôme Goudet, Kenneth G. Ross, DeWayne Shoemaker
Science  ·  25 Feb 2011  ·  doi:10.1126/science.1198734

2010

Evolution in heterogeneous populations: From migration models to fixation probabilities
Evolution in heterogeneous populations: From migration models to fixation probabilities
S. Vuilleumier, J. Goudet, N. Perrin
Theoretical Population Biology  ·  01 Dec 2010  ·  doi:10.1016/j.tpb.2010.08.004
Genetic isolation of insular populations of the Maghrebian bat, i Myotis punicus i , in the Mediterranean Basin
Genetic isolation of insular populations of the Maghrebian bat, Myotis punicus, in the Mediterranean Basin
François Biollaz, Nadia Bruyndonckx, Grégory Beuneux, Mauro Mucedda, Jérôme Goudet, Philippe Christe
Journal of Biogeography  ·  15 Jul 2010  ·  doi:10.1111/j.1365-2699.2010.02282.x
Mites as biological tags of their hosts
Mites as biological tags of their hosts
NADIA BRUYNDONCKX, FRANÇOIS BIOLLAZ, SYLVAIN DUBEY, JÉRÔME GOUDET, PHILIPPE CHRISTE
Molecular Ecology  ·  29 Jun 2010  ·  doi:10.1111/j.1365-294X.2010.04699.x
Fine-scale spatial genetic structure and gene dispersal in Silene latifolia
Fine-scale spatial genetic structure and gene dispersal in Silene latifolia
M Barluenga, F Austerlitz, J A Elzinga, S Teixeira, J Goudet, G Bernasconi
Heredity  ·  14 Apr 2010  ·  doi:10.1038/hdy.2010.38
LOCAL ADAPTATION MAINTAINS CLINAL VARIATION IN MELANIN-BASED COLORATION OF EUROPEAN BARN OWLS i TYTO ALBA i
LOCAL ADAPTATION MAINTAINS CLINAL VARIATION IN MELANIN-BASED COLORATION OF EUROPEAN BARN OWLS (TYTO ALBA)
Sylvain Antoniazza, Reto Burri, Luca Fumagalli, Jérôme Goudet, Alexandre Roulin
Evolution  ·  01 Mar 2010  ·  doi:10.1111/j.1558-5646.2010.00969.x

2009

CORRELATED EVOLUTION OF MATING STRATEGY AND INBREEDING DEPRESSION WITHIN AND AMONG POPULATIONS OF THE HERMAPHRODITIC SNAIL i PHYSA ACUTA i
CORRELATED EVOLUTION OF MATING STRATEGY AND INBREEDING DEPRESSION WITHIN AND AMONG POPULATIONS OF THE HERMAPHRODITIC SNAILPHYSA ACUTA
Juan S. Escobar, Benoît Facon, Philippe Jarne, Jérôme Goudet, Patrice David
Evolution  ·  01 Nov 2009  ·  doi:10.1111/j.1558-5646.2009.00760.x
Reduced genetic diversity, increased isolation and multiple introductions of invasive giant hogweed in the western Swiss Alps
Reduced genetic diversity, increased isolation and multiple introductions of invasive giant hogweed in the western Swiss Alps
P. HENRY, G. LE LAY, J. GOUDET, A. GUISAN, Š. JAHODOVÁ, G. BESNARD
Molecular Ecology  ·  22 Jun 2009  ·  doi:10.1111/j.1365-294X.2009.04237.x
Parallel changes in genetic diversity and species diversity following a natural disturbance
Parallel changes in genetic diversity and species diversity following a natural disturbance
GUILLAUME EVANNO, EMMANUEL CASTELLA, CÉLINE ANTOINE, GABRIELLE PAILLAT, JÉRÔME GOUDET
Molecular Ecology  ·  01 Mar 2009  ·  doi:10.1111/j.1365-294X.2009.04102.x
Inferring recent migration rates from individual genotypes
Inferring recent migration rates from individual genotypes
THOMAS BROQUET, JONATHAN YEARSLEY, ALEXANDRE H. HIRZEL, JÉRÔME GOUDET, NICOLAS PERRIN
Molecular Ecology  ·  01 Mar 2009  ·  doi:10.1111/j.1365-294X.2008.04058.x

2008

Multivariate i Q i st i F i st Comparisons: A Neutrality Test for the Evolution of the G Matrix in Structured Populations
MultivariateQst–Fst Comparisons: A Neutrality Test for the Evolution of the G Matrix in Structured Populations
Guillaume Martin, Elodie Chapuis, Jérôme Goudet
Genetics  ·  01 Dec 2008  ·  doi:10.1534/genetics.107.080820
Effects of Selection and Drift on G Matrix Evolution in a Heterogeneous Environment: A Multivariate i Q i st i F i st Test With the Freshwater Snail i Galba truncatula i
Effects of Selection and Drift on G Matrix Evolution in a Heterogeneous Environment: A MultivariateQst–Fst Test With the Freshwater SnailGalba truncatula
Elodie Chapuis, Guillaume Martin, Jérôme Goudet
Genetics  ·  01 Dec 2008  ·  doi:10.1534/genetics.108.092452
How accurate is the current picture of human genetic variation
How accurate is the current picture of human genetic variation?
I G Romero, A Manica, J Goudet, L L Handley, F Balloux
Heredity  ·  03 Sep 2008  ·  doi:10.1038/hdy.2008.89
quantiNemo: an individual-based program to simulate quantitative traits with explicit genetic architecture in a dynamic metapopulation
quantiNemo: an individual-based program to simulate quantitative traits with explicit genetic architecture in a dynamic metapopulation
Samuel Neuenschwander, Frédéric Hospital, Frédéric Guillaume, Jérôme Goudet
Bioinformatics  ·  01 May 2008  ·  doi:10.1093/bioinformatics/btn219
A set of primers for plastid indels and nuclear microsatellites in the invasive plant i Heracleum mantegazzianum i Apiaceae and their transferability to i Heracleum sphondylium i
A set of primers for plastid indels and nuclear microsatellites in the invasive plant Heracleum mantegazzianum (Apiaceae) and their transferability to Heracleum sphondylium
P. HENRY, J. PROVAN, J. GOUDET, A. GUISAN, Š. JAHODOVÁ, G. BESNARD
Molecular Ecology Resources  ·  01 Jan 2008  ·  doi:10.1111/j.1471-8286.2007.01911.x

2007

A step-by-step tutorial to use HierFstat to analyse populations hierarchically structured at multiple levels
A step-by-step tutorial to use HierFstat to analyse populations hierarchically structured at multiple levels
Thierry de Meeûs, Jérôme Goudet
Infection, Genetics and Evolution  ·  01 Dec 2007  ·  doi:10.1016/j.meegid.2007.07.005
Effect of mating history on gender preference in the hermaphroditic snail Physa acuta
Effect of mating history on gender preference in the hermaphroditic snail Physa acuta
Benoît Facon, Virginie Ravignē, Laure Sauteur, Jérôme Goudet
Animal Behaviour  ·  01 Nov 2007  ·  doi:10.1016/j.anbehav.2007.02.019
Gender-role alternation in the simultaneously hermaphroditic freshwater snail Physa acuta: not with the same partner
Gender-role alternation in the simultaneously hermaphroditic freshwater snail Physa acuta: not with the same partner
Benoît Facon, Virginie Ravigné, Jérôme Goudet
Behavioral Ecology and Sociobiology  ·  26 Sep 2007  ·  doi:10.1007/s00265-007-0496-x
Going the distance: human population genetics in a clinal world
Going the distance: human population genetics in a clinal world
Lori J. Lawson Handley, Andrea Manica, Jérôme Goudet, François Balloux
Trends in Genetics  ·  01 Sep 2007  ·  doi:10.1016/j.tig.2007.07.002
High quantitative and no molecular differentiation of a freshwater snail i Galba truncatula i between temporary and permanent water habitats
High quantitative and no molecular differentiation of a freshwater snail (Galba truncatula) between temporary and permanent water habitats
ELODIE CHAPUIS, SANDRINE TROUVE, BENOIT FACON, LOÏC DEGEN, JEROME GOUDET
Molecular Ecology  ·  17 Jul 2007  ·  doi:10.1111/j.1365-294X.2007.03386.x
Under Neutrality, i Q i ST i F i ST When There Is Dominance in an Island Model
Under Neutrality, QST ≤ FST When There Is Dominance in an Island Model
Jérôme Goudet, Guillaume Martin
Genetics  ·  01 Jun 2007  ·  doi:10.1534/genetics.106.067173
Reliable selfing rate estimates from imperfect population genetic data
Reliable selfing rate estimates from imperfect population genetic data
PATRICE DAVID, BENOÎT PUJOL, FRÉDÉRIQUE VIARD, VINCENT CASTELLA, JÉRÔME GOUDET
Molecular Ecology  ·  16 May 2007  ·  doi:10.1111/j.1365-294X.2007.03330.x

2006

Variation in the intensity of inbreeding depression among successive life-cycle stages and generations in gynodioecious i Silene vulgaris i Caryophyllaceae
Variation in the intensity of inbreeding depression among successive life-cycle stages and generations in gynodioecious Silene vulgaris (Caryophyllaceae)
M. Glaettli, J. Goudet
Journal of Evolutionary Biology  ·  01 Nov 2006  ·  doi:10.1111/j.1420-9101.2006.01147.x
Inbreeding effects on progeny sex ratio and gender variation in the gynodioecious i Silene vulgaris i Caryophyllaceae
Inbreeding effects on progeny sex ratio and gender variation in the gynodioecious Silene vulgaris (Caryophyllaceae)
Mélanie Glaettli, Jérôme Goudet
New Phytologist  ·  05 Sep 2006  ·  doi:10.1111/j.1469-8137.2006.01866.x
Experimental evidence of inbreeding avoidance in the hermaphroditic snail Physa acuta
Experimental evidence of inbreeding avoidance in the hermaphroditic snail Physa acuta
Benoît Facon, Virginie Ravigné, Jérôme Goudet
Evolutionary Ecology  ·  01 Sep 2006  ·  doi:10.1007/s10682-006-0009-9
Evolutionary aspects of population structure for molecular and quantitative traits in the freshwater snail i Radix balthica i
Evolutionary aspects of population structure for molecular and quantitative traits in the freshwater snail Radix balthica
G. Evanno, E. Castella, J. Goudet
Journal of Evolutionary Biology  ·  01 Jul 2006  ·  doi:10.1111/j.1420-9101.2006.01098.x
Proximity-dependent Pollen Performance in Silene vulgaris
Proximity-dependent Pollen Performance in Silene vulgaris
MÉLANIE GLAETTLI, LUCA PESCATORE, JÉRÔME GOUDET
Annals of Botany  ·  30 May 2006  ·  doi:10.1093/aob/mcl119
The Effects of Dominance, Regular Inbreeding and Sampling Design on i Q i ST, an Estimator of Population Differentiation for Quantitative Traits
The Effects of Dominance, Regular Inbreeding and Sampling Design on QST, an Estimator of Population Differentiation for Quantitative Traits
Jérôme Goudet, Lucie Büchi
Genetics  ·  01 Feb 2006  ·  doi:10.1534/genetics.105.050583

2005

Heterozygote advantage and the maintenance of polymorphism for multilocus traits
Heterozygote advantage and the maintenance of polymorphism for multilocus traits
Alexandre Ding, Jérôme Goudet
Theoretical Population Biology  ·  01 Nov 2005  ·  doi:10.1016/j.tpb.2005.06.002
Detecting the number of clusters of individuals using the software scp structure scp : a simulation study
Detecting the number of clusters of individuals using the software structure: a simulation study
G. EVANNO, S. REGNAUT, J. GOUDET
Molecular Ecology  ·  11 May 2005  ·  doi:10.1111/j.1365-294X.2005.02553.x

2004

Ecological components and evolution of selfing in the freshwater snail i Galba truncatula i
Ecological components and evolution of selfing in the freshwater snail Galba truncatula
S. Trouve, L. Degen, J. Goudet
Journal of Evolutionary Biology  ·  18 Nov 2004  ·  doi:10.1111/j.1420-9101.2004.00831.x
Synergistic epistasis and alternative hypotheses
Synergistic epistasis and alternative hypotheses
S. Trouve, A. Ding, J. Goudet
Journal of Evolutionary Biology  ·  01 Nov 2004  ·  doi:10.1111/j.1420-9101.2004.00755.x
High genetic variability and low local diversity in a population of arbuscular mycorrhizal fungi
High genetic variability and low local diversity in a population of arbuscular mycorrhizal fungi
Alexander M. Koch, Gerrit Kuhn, Pierre Fontanillas, Luca Fumagalli, Jérôme Goudet, Ian R. Sanders
Proceedings of the National Academy of Sciences  ·  11 Feb 2004  ·  doi:10.1073/pnas.0306441101

2003

Isolation and characterization of highly polymorphic microsatellite loci in the bladder campion, i Silene vulgaris i Caryophyllaceae
Isolation and characterization of highly polymorphic microsatellite loci in the bladder campion, Silene vulgaris (Caryophyllaceae)
Nicolas Juillet, HervÉ Freymond, Loïc Degen, JÉrÔme Goudet
Molecular Ecology Notes  ·  13 May 2003  ·  doi:10.1046/j.1471-8286.2003.00449.x
THE ADDITIVE GENETIC VARIANCE AFTER BOTTLENECKS IS AFFECTED BY THE NUMBER OF LOCI INVOLVED IN EPISTATIC INTERACTIONS
THE ADDITIVE GENETIC VARIANCE AFTER BOTTLENECKS IS AFFECTED BY THE NUMBER OF LOCI INVOLVED IN EPISTATIC INTERACTIONS
Yamama Naciri-Graven, Jérocme Goudet
Evolution  ·  01 Apr 2003  ·  doi:10.1111/j.0014-3820.2003.tb00284.x

2002

Geographical and altitudinal population genetic structure of two dung fly species with contrasting mobility and temperature preference
Geographical and altitudinal population genetic structure of two dung fly species with contrasting mobility and temperature preference
U Kraushaar, J Goudet, W U Blanckenhorn
Heredity  ·  24 Jul 2002  ·  doi:10.1038/sj.hdy.6800097
Tests for sex biased dispersal using bi parentally inherited genetic markers
Tests for sex‐biased dispersal using bi‐parentally inherited genetic markers
Jérôme Goudet, Nicolas Perrin, Peter Waser
Molecular Ecology  ·  28 May 2002  ·  doi:10.1046/j.1365-294X.2002.01496.x
The correlation between inbreeding and fitness: does allele size matter
The correlation between inbreeding and fitness: does allele size matter?
J Goudet
Trends in Ecology & Evolution  ·  01 May 2002  ·  doi:10.1016/S0169-5347(02)02467-9
Statistical properties of population differentiation estimators under stepwise mutation in a finite island model
Statistical properties of population differentiation estimators under stepwise mutation in a finite island model
F. Balloux, J. Goudet
Molecular Ecology  ·  01 Apr 2002  ·  doi:10.1046/j.1365-294X.2002.01474.x

2000

Microsatellites in the hermaphroditic snail, i Lymnaea truncatula i , intermediate host of the liver fluke, i Fasciola hepatica i
Microsatellites in the hermaphroditic snail, Lymnaea truncatula, intermediate host of the liver fluke, Fasciola hepatica
S. Trouvé, L. Degen, C. Meunier, C. Tirard, S. Hurtrez‐Boussès, P. Durand, J. F. Guégan, J. Goudet, F. Renaud
Molecular Ecology  ·  01 Oct 2000  ·  doi:10.1046/j.1365-294X.2000.01040-2.x
MICROSATELLITES CAN BE MISLEADING: AN EMPIRICAL AND SIMULATION STUDY
MICROSATELLITES CAN BE MISLEADING: AN EMPIRICAL AND SIMULATION STUDY
François Balloux, Harald Brunner, Nicolas Lugon-Moulin, Jacques Hausser, Jéarôme Goudet
Evolution  ·  01 Aug 2000  ·  doi:10.1111/j.0014-3820.2000.tb00573.x

1999

Do riverine barriers, history or introgression shape the genetic structuring of a common shrew Sorex araneus population
Do riverine barriers, history or introgression shape the genetic structuring of a common shrew (Sorex araneus) population?
Nicolas Lugon-moulin, Harald Brünner, François Balloux, Jacques Hausser, Jérôme Goudet
Heredity  ·  01 Aug 1999  ·  doi:10.1046/j.1365-2540.1999.00567.x
An Improved Procedure for Testing the Effects of Key Innovations on Rate of Speciation
An Improved Procedure for Testing the Effects of Key Innovations on Rate of Speciation
Jérôme Goudet
The American Naturalist  ·  01 May 1999  ·  doi:10.1086/303190
Hierarchical analyses of genetic differentiation in a hybrid zone of i Sorex araneus i Insectivora: Soricidae
Hierarchical analyses of genetic differentiation in a hybrid zone of Sorex araneus (Insectivora: Soricidae)
N. LUGON‐MOULIN, H. BRÜNNER, A. WYTTENBACH, J. HAUSSER, J. GOUDET
Molecular Ecology  ·  01 Mar 1999  ·  doi:10.1046/j.1365-294X.1999.00595.x
Genetic structure of the genus Leptospira by multilocus enzyme electrophoresis
Genetic structure of the genus Leptospira by multilocus enzyme electrophoresis
M. Letocart, P. Boerlin, F. Boerlin-Petzold, J. Goudet, G. Baranton, P. Perolat
International Journal of Systematic and Evolutionary Microbiology  ·  01 Jan 1999  ·  doi:10.1099/00207713-49-1-231

1998

Restricted gene flow and subpopulation differentiation in Silene dioica
Restricted gene flow and subpopulation differentiation in Silene dioica
Barbara E Giles, Elisabeth Lundqvist, Jérôme Goudet
Heredity  ·  01 Jun 1998  ·  doi:10.1046/j.1365-2540.1998.00348.x
Rate of gene sequence evolution and species diversification in flowering plants: a re evaluation
Rate of gene sequence evolution and species diversification in flowering plants: a re–evaluation
Vincent Savolainen, Jérôme Goudet
Proceedings of the Royal Society of London. Series B: Biological Sciences  ·  07 Apr 1998  ·  doi:10.1098/rspb.1998.0337
Microsatellite conservation, polymorphism, and GC content in shrews of the genus Sorex Insectivora, Mammalia
Microsatellite conservation, polymorphism, and GC content in shrews of the genus Sorex (Insectivora, Mammalia)
F. Balloux, E. Ecoffey, L. Fumagalli, J. Goudet, A. Wyttenbach, J. Hausser
Molecular Biology and Evolution  ·  01 Apr 1998  ·  doi:10.1093/oxfordjournals.molbev.a025945

1997

Genetic Differentiation in Silene dioica Metapopulations: Estimation of Spatiotemporal Effects in a Successional Plant Species
Genetic Differentiation in Silene dioica Metapopulations: Estimation of Spatiotemporal Effects in a Successional Plant Species
Barbara E. Giles, Jerome Goudet
The American Naturalist  ·  01 Mar 1997  ·  doi:10.1086/286002
Female-biased dispersal in the monogamous mammal i Crocidura russula i : evidence from field data and microsatellite patterns.
Female-biased dispersal in the monogamous mammalCrocidura russula: evidence from field data and microsatellite patterns.
Laurence Favre, François Balloux, Jerome Goudet, Nicolas Perrin
Proceedings of the Royal Society of London. Series B: Biological Sciences  ·  22 Jan 1997  ·  doi:10.1098/rspb.1997.0019

1996

Genetic structure of a linear population of Beta vulgaris ssp. maritima sea beet revealed by isozyme and RFLP analysis
Genetic structure of a linear population of Beta vulgaris ssp. maritima (sea beet) revealed by isozyme and RFLP analysis
A F Raybould, J Goudet, R J Mogg, C J Gliddon, A J Gray
Heredity  ·  01 Feb 1996  ·  doi:10.1038/hdy.1996.17
Genetic differentiation of continental and island populations of i Bombus terrestris i Hymenoptera: Apidae in Europe
Genetic differentiation of continental and island populations of Bombus terrestris (Hymenoptera: Apidae) in Europe
A. ESTOUP, M. SOLIGNAC, J. M. CORNUET, J. GOUDET, A. SCHOLL
Molecular Ecology  ·  01 Feb 1996  ·  doi:10.1111/j.1365-294X.1996.tb00288.x

1995

FSTAT Version 1.2 : A Computer Program to Calculate F-Statistics
FSTAT (Version 1.2): A Computer Program to Calculate F-Statistics
J. Goudet
Journal of Heredity  ·  01 Nov 1995  ·  doi:10.1093/oxfordjournals.jhered.a111627